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science
way of knowing, an approach to understanding the natural world
Endotherm
Can raise their body temperature above waters temperature. (Warm Blooded)
Exampled of enfotherm
Great white shark, tuna, swordfish, birds, mammals
Ectotherm
Regulated temperature by exchanging heat with its surrounding. (Cold blooded)
Examples of ectotherm
crayfish, crab, goldfish, plants
Piezophile/ Barophile
Pressure loving Bacteria. Can thrive at pressures that kill bacteria
Halophile
Bacteria with a red pigment, live in osmotic equilibrium with 3 molar salt
Thermophile
Bacteria that exist in temperatures up to 132 degrees C, hydrothermal vents, live with 1/2 molar urea (potent proteins) in their tissue.
Atomic Mass
protons plus nuetrons
Atomic Number
Protons and electrons (unless ion)
Electron Shell
2,8,8,18,18,32,32
Valence
the number of unpaired electrons in the outermost shell
Why is valence important?
If the outer shell is full, then it is unreactive
Valence electrons
The total number of electrons found on the outermost shell
Strong Bonds
Covalent bonds
Covalent bonds
Strong bonds that share electrons to complete the valence shell
Polar Covalent Bonds
unequal share of electrons with no net charge
Non-Polar covalent Bonds
Equal share of electrons
Weak Bonds
Hydrogen bonds and ionic Bonds
Hydrogen bonds and Ionic bonds
Weak bonds that transfer electrons to one another
Electronegativity
The attraction of a particular atom for the electrons of a covalent bond, the more electroneg. the more polar
Electronegativity numbers
0- Non polar 1-Polar 2-Ionic
High Heat Capacity
amount of heat to raise 1 g of water by 1 degree C
High heat of Vaporization
Amount of heat to vaporize 1 g of water. .539 cal/g at 100 degrees C
High Heat of fusion
Amount of heat to freeze 1g of water/ .080 cal/g
Most Dense at 4 Degrees C
Lakes do not freeze from the bottom up, water is less dense as a solid than a liquid
High Delectric
Good solvent (what is actually being dissolved)
Capillary action and surface tension
Due to hydrogen bonding
Ionization
Dissociation into acid (hydronium ion) and base (hydroxl ion)
What do pH and pOH add up to
14
pH less than 7
acidic
pH more than 7
basic
pH 7
nuetral
Supercooling (undercooling)
cooling of liquid below its freezing point without the formation of ice crystals
Problem with supercooling
ice can form spontaneously, damaging tissues
How does Lobelia Teleki keep its tissues from freezing even when the air temperature drops to -10 degrees C?
Ice nucleators maintain fluid and plant temp at 0 Degrees C, which keeps it from freezing. Water in plant releases heat of fusion, keeping the plant tissues form freezing
What do ice nucleators have in them
proteins, polysaccharides which prevent supercooling and cause freezing at higher temperatures
Antarctic fish prevent ice formation in their tissue, even though they have cell temps below freezing point. They do this by accumulating anti freeze proteins. How?
Antifreeze peptides H-bonds with Ice, making it energetically more difficult to add a water molecule to a curved surface of ice crystals, decreasing the freezing point.
Colligative properties
Depend on the number of particles, not the nature of them
Why are antifreeze proteins called hysteresis proteins?
They affect freezing point, but not melting point
Hydroxyl
H is bonded to O
Hydroxyl group
ALCOHOLS
Carbonyl
O atom is double bonded to C
Carbonyl Group
ALDEHYDES AND KEYTONES
Carboxyl
O is double bonded to C which is also bonded to -OH group
Carboxyl Group
ACID
Amino
2 H atoms are bonded to N which is also bonded to a carbon skeleton
Amino Group
AMINES
Phosphate
4 O atoms are bonded to P. 2 of those O are negatively charged and one O is bonded to a carbon skeleton
Phosphate Group
ORGANIC PHOSPHATE
Sulfhydryl
S atom is bonded to H (Looks like hydroxyl)
Sulfhydryl Group
THIOLS
Methyl
3 H atoms are bonded to C
Methyl Group
CH3 (NONPOLAR)
Dehydration (condensation) Synthesis of a polymer?
proceeds with the removal of a water molecule
Dehydration reaction
Monomers are connected by a reaction in which 2 molecules are covalently bonded with the LOSS of a water molecule
Hydrolesis (breakdown of a polymer)
reverse of dehydration reaction, bond between monomers is broken by the addition of a water molecule
How many covalent bonds are there in a protein 50 amino acids long?
49 ( always one less)
Carbohydrates Structural role
plants- cellulose animals- chitin
Carbohydrates energy role
plants- starch Animals- glycogen metabolic fuels storage form
Monosacharides
most common is sugar (glucose)
Disacharide
2 monosaccharides joined by glycosidic linkage (a covalent bond)
Polysacharide
polymers with a few hundred thousand monosacharides joined by glycosidic linkage
How much energy is available relative to an equal mass of lipid?
2 times as much is available from fat apposed to sugars
Lipids
water insoluble bio molecules made up of nonpolar groups (structural component of cell membrane)
Saturated fat
saturated with hydrogen atoms, no double or triple bonds with carbon (butter)
Unsaturated Fat
double bonds cause kink in the structure of the lipid due tot acyl chains (oil)
Unsaturated Fats melting point
Have a lower melting point than saturated and are solid at room temperature
Triglyceride
Polymer, driven from glycerol and 3 fatty acids
Phospholipid
polymer of lipids with phosphate groups and compose the cell membrane of cells
Hydrophobic
Hates water, TAILS that when comprise the cell membrane are with the membrane and touch no water
Hydrophillic
Water loving, HEADS that when comprise the cell mebrane face the outside and inside of the cell
Proteins
made up of amino acids
What do all 20 amino acids have in common?
central carbon, Amino group, carboxyl group, Hydrogen, r groups
What are R groups
Side chains on amino acid
Polar R Groups
Interact with partially neg and pos water (hydrophilic)
Non-Polar R Groups
No partial charges (hydrophobic)
Hydrophobic R groups
Non- Polar and are buried in the interior of proteins
Hydrophilic R goups
Polar and interact with one another on the surface
How is the covalent linkage between amino acids formed?
Dehydration synthesis, not does involve R groups (amino and carboxyl groups are involved)
Levels all proteins share in common
primary, secondary, tertiary, quaternary
How is primary stablized
Covalent bonds on the peptide backbone
How is secondary stabilized
Hydrogen bonds on the peptide backbone
How is tertiary stabilized
R groups, hydrogen, ionic, hydrophobic, vanderwalls interactions, strong sulfide bridge, SH group form covalent bond
How is quaternary stabilized
multiple polypeptides chains fit together to form a larger protein, can be identical subunits or different polypeptides
Prion disease
Caused by infectious proteins, slowly developing, indestructible
How is prion spread?
tissues and instruments
CJD
cruetz feld jacobs disease, onset at 60 or older, caused from eating meat from infected cows
vCJD
early onset of CJD
CWD
Chronic wasting disease, deals with mule deer and elk
Kuru
Laughing disease in Papeu New Guinea
Scrapie
Sheep/ only new z and Austria are free from this
ALL EPIDEMIOLOGY IS LINKED TO
CATTLE PRODUCTS CONTAMINATED WITH BSE (BOVINE SPONGIFORM ENCEPHALOPATHY)
Prion Proteins in normal form
Alpha helix that may protect from toxic copper ions
Prion Proteins in Disease form
Beta pleated sheet
What limit cell size?
Cells surface to volume ratio and the time it takes molecules to diffuse across a cell membrane
All cells are bounded by
Plasma membrane
All cells are bounded by
Plasma membrane
Prokaryotic cells
Lack nuclei and other membrane enclosed organelles
Eukaryotic Cells
Have internal membranes that compartmentalize cellular function
Nucleus
Eukaryotes only, surrounded by nuclear envelope, has nuclear pores that regulate what goes in and out, houses chromosomes, ribosome subunits are made here
Endoplasmic Reticulum
more than half the total membrane with eukaryotic cells, regulates protein traffic, lipids carbs and proteins are involed, sorts materials belonging to the cytoplasm form those that dont
Smooth ER
Synthesis of lipids, detox of drugs, calcium storage, metabolism of carbs
Rough ER
Synthesis of proteins from bound ribosomes, produces new membrane, adds carbs to proteins (glycoproteins), transmit to other cells
Lysosome
Breakdown of injection, work best in acidic environment
Vacuole
digestion, storage, waster, water balances, cell growth
Mitochandria
Eukaryotes only, 2 membranes, cellular respiration, generates ATP, lipids metabolize here, inherited by mother in humans
Chloroplast
3 membranes (inner, outer, thylaked) stroma, ribosomes, only in plants (photosynthesis)
endomembrane system
Endoplasmic reticulum, golgi apparatus, smooth er, rough er, lysosome, vacuole
Golgi apparatus
eukaryotes only, modifications of proteins, carbs on proteins, and pholipids (disc shaped), components transported from ER to Golgi A

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