110 Cards in this Set
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science
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way of knowing, an approach to understanding the natural world
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Endotherm
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Can raise their body temperature above waters temperature. (Warm Blooded)
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Exampled of enfotherm
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Great white shark, tuna, swordfish, birds, mammals
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Ectotherm
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Regulated temperature by exchanging heat with its surrounding. (Cold blooded)
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Examples of ectotherm
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crayfish, crab, goldfish, plants
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Piezophile/ Barophile
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Pressure loving Bacteria. Can thrive at pressures that kill bacteria
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Halophile
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Bacteria with a red pigment, live in osmotic equilibrium with 3 molar salt
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Thermophile
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Bacteria that exist in temperatures up to 132 degrees C, hydrothermal vents, live with 1/2 molar urea (potent proteins) in their tissue.
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Atomic Mass
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protons plus nuetrons
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Atomic Number
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Protons and electrons (unless ion)
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Electron Shell
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2,8,8,18,18,32,32
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Valence
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the number of unpaired electrons in the outermost shell
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Why is valence important?
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If the outer shell is full, then it is unreactive
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Valence electrons
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The total number of electrons found on the outermost shell
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Strong Bonds
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Covalent bonds
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Covalent bonds
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Strong bonds that share electrons to complete the valence shell
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Polar Covalent Bonds
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unequal share of electrons with no net charge
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Non-Polar covalent Bonds
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Equal share of electrons
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Weak Bonds
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Hydrogen bonds and ionic Bonds
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Hydrogen bonds and Ionic bonds
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Weak bonds that transfer electrons to one another
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Electronegativity
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The attraction of a particular atom for the electrons of a covalent bond, the more electroneg. the more polar
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Electronegativity numbers
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0- Non polar
1-Polar
2-Ionic
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High Heat Capacity
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amount of heat to raise 1 g of water by 1 degree C
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High heat of Vaporization
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Amount of heat to vaporize 1 g of water. .539 cal/g at 100 degrees C
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High Heat of fusion
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Amount of heat to freeze 1g of water/ .080 cal/g
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Most Dense at 4 Degrees C
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Lakes do not freeze from the bottom up, water is less dense as a solid than a liquid
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High Delectric
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Good solvent (what is actually being dissolved)
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Capillary action and surface tension
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Due to hydrogen bonding
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Ionization
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Dissociation into acid (hydronium ion) and base (hydroxl ion)
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What do pH and pOH add up to
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14
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pH less than 7
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acidic
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pH more than 7
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basic
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pH 7
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nuetral
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Supercooling (undercooling)
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cooling of liquid below its freezing point without the formation of ice crystals
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Problem with supercooling
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ice can form spontaneously, damaging tissues
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How does Lobelia Teleki keep its tissues from freezing even when the air temperature drops to -10 degrees C?
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Ice nucleators maintain fluid and plant temp at 0 Degrees C, which keeps it from freezing. Water in plant releases heat of fusion, keeping the plant tissues form freezing
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What do ice nucleators have in them
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proteins, polysaccharides which prevent supercooling and cause freezing at higher temperatures
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Antarctic fish prevent ice formation in their tissue, even though they have cell temps below freezing point. They do this by accumulating anti freeze proteins. How?
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Antifreeze peptides H-bonds with Ice, making it energetically more difficult to add a water molecule to a curved surface of ice crystals, decreasing the freezing point.
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Colligative properties
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Depend on the number of particles, not the nature of them
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Why are antifreeze proteins called hysteresis proteins?
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They affect freezing point, but not melting point
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Hydroxyl
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H is bonded to O
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Hydroxyl group
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ALCOHOLS
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Carbonyl
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O atom is double bonded to C
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Carbonyl Group
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ALDEHYDES AND KEYTONES
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Carboxyl
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O is double bonded to C which is also bonded to -OH group
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Carboxyl Group
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ACID
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Amino
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2 H atoms are bonded to N which is also bonded to a carbon skeleton
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Amino Group
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AMINES
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Phosphate
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4 O atoms are bonded to P. 2 of those O are negatively charged and one O is bonded to a carbon skeleton
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Phosphate Group
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ORGANIC PHOSPHATE
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Sulfhydryl
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S atom is bonded to H (Looks like hydroxyl)
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Sulfhydryl Group
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THIOLS
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Methyl
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3 H atoms are bonded to C
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Methyl Group
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CH3 (NONPOLAR)
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Dehydration (condensation) Synthesis of a polymer?
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proceeds with the removal of a water molecule
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Dehydration reaction
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Monomers are connected by a reaction in which 2 molecules are covalently bonded with the LOSS of a water molecule
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Hydrolesis (breakdown of a polymer)
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reverse of dehydration reaction, bond between monomers is broken by the addition of a water molecule
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How many covalent bonds are there in a protein 50 amino acids long?
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49 ( always one less)
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Carbohydrates Structural role
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plants- cellulose
animals- chitin
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Carbohydrates energy role
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plants- starch
Animals- glycogen
metabolic fuels
storage form
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Monosacharides
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most common is sugar (glucose)
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Disacharide
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2 monosaccharides joined by glycosidic linkage (a covalent bond)
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Polysacharide
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polymers with a few hundred thousand monosacharides joined by glycosidic linkage
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How much energy is available relative to an equal mass of lipid?
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2 times as much is available from fat apposed to sugars
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Lipids
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water insoluble bio molecules made up of nonpolar groups (structural component of cell membrane)
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Saturated fat
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saturated with hydrogen atoms, no double or triple bonds with carbon (butter)
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Unsaturated Fat
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double bonds cause kink in the structure of the lipid due tot acyl chains (oil)
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Unsaturated Fats melting point
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Have a lower melting point than saturated and are solid at room temperature
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Triglyceride
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Polymer, driven from glycerol and 3 fatty acids
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Phospholipid
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polymer of lipids with phosphate groups and compose the cell membrane of cells
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Hydrophobic
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Hates water, TAILS that when comprise the cell membrane are with the membrane and touch no water
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Hydrophillic
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Water loving, HEADS that when comprise the cell mebrane face the outside and inside of the cell
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Proteins
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made up of amino acids
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What do all 20 amino acids have in common?
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central carbon, Amino group, carboxyl group, Hydrogen, r groups
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What are R groups
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Side chains on amino acid
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Polar R Groups
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Interact with partially neg and pos water (hydrophilic)
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Non-Polar R Groups
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No partial charges (hydrophobic)
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Hydrophobic R groups
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Non- Polar and are buried in the interior of proteins
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Hydrophilic R goups
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Polar and interact with one another on the surface
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How is the covalent linkage between amino acids formed?
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Dehydration synthesis, not does involve R groups (amino and carboxyl groups are involved)
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Levels all proteins share in common
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primary, secondary, tertiary, quaternary
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How is primary stablized
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Covalent bonds on the peptide backbone
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How is secondary stabilized
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Hydrogen bonds on the peptide backbone
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How is tertiary stabilized
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R groups, hydrogen, ionic, hydrophobic, vanderwalls interactions, strong sulfide bridge, SH group form covalent bond
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How is quaternary stabilized
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multiple polypeptides chains fit together to form a larger protein, can be identical subunits or different polypeptides
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Prion disease
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Caused by infectious proteins, slowly developing, indestructible
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How is prion spread?
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tissues and instruments
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CJD
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cruetz feld jacobs disease, onset at 60 or older, caused from eating meat from infected cows
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vCJD
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early onset of CJD
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CWD
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Chronic wasting disease, deals with mule deer and elk
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Kuru
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Laughing disease in Papeu New Guinea
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Scrapie
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Sheep/ only new z and Austria are free from this
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ALL EPIDEMIOLOGY IS LINKED TO
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CATTLE PRODUCTS CONTAMINATED WITH BSE (BOVINE SPONGIFORM ENCEPHALOPATHY)
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Prion Proteins in normal form
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Alpha helix that may protect from toxic copper ions
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Prion Proteins in Disease form
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Beta pleated sheet
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What limit cell size?
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Cells surface to volume ratio and the time it takes molecules to diffuse across a cell membrane
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All cells are bounded by
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Plasma membrane
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All cells are bounded by
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Plasma membrane
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Prokaryotic cells
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Lack nuclei and other membrane enclosed organelles
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Eukaryotic Cells
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Have internal membranes that compartmentalize cellular function
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Nucleus
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Eukaryotes only, surrounded by nuclear envelope, has nuclear pores that regulate what goes in and out, houses chromosomes, ribosome subunits are made here
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Endoplasmic Reticulum
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more than half the total membrane with eukaryotic cells, regulates protein traffic, lipids carbs and proteins are involed, sorts materials belonging to the cytoplasm form those that dont
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Smooth ER
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Synthesis of lipids, detox of drugs, calcium storage, metabolism of carbs
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Rough ER
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Synthesis of proteins from bound ribosomes, produces new membrane, adds carbs to proteins (glycoproteins), transmit to other cells
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Lysosome
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Breakdown of injection, work best in acidic environment
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Vacuole
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digestion, storage, waster, water balances, cell growth
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Mitochandria
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Eukaryotes only, 2 membranes, cellular respiration, generates ATP, lipids metabolize here, inherited by mother in humans
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Chloroplast
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3 membranes (inner, outer, thylaked) stroma, ribosomes, only in plants (photosynthesis)
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endomembrane system
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Endoplasmic reticulum, golgi apparatus, smooth er, rough er, lysosome, vacuole
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Golgi apparatus
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eukaryotes only, modifications of proteins, carbs on proteins, and pholipids (disc shaped), components transported from ER to Golgi A
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