Recommended readings Baum D A and A Larson 1991 Adaptation reviewed A phylogenetic methodology for studying character macroevolution Systematic Zoology 40 1 18 Baum D A and M J Donoghue 1995 Choosing between alternative phylogenetic species concepts Systematic Botany 20 560 573 Baum D A and M J Donoghue 2002 Transference of Function heterotopy and the evolution of plant development Pages 52 69 In Q C B Cronk R M Bateman and J A Hawkins eds Developmental Genetics and Plant Evolution Taylor and Francis London Davis J I and K C Nixon 1992 Populations genetic variation and the delimitation of phylogenetic species Systematic Biology 41 421 435 de Queiroz K 2005 Different species problems and their resolution Bioessays 27 1263 1269 Ereshefksy M 1992 Eliminative pluralism Philosophy of Science 59 671 690 Faith D P 2002 Quantifying diversity A phylogenetic perspective Conservation Biology 16 1 248 252 Felsenstein J 1985 Phylogenies and the comparative method American Naturalist 125 1 1 15 Ghiselin M 1974 Radical solution to the species problem Systematic Zoology 23 536 544 Gould S J and E S Vrba 1982 Exaptation a missing term in the science of form Paleobiology 8 4 15 Grantham T A 1995 Hierarchical approaches to macroevolution Recent work on species selection and the effect hypothesis Annu Rev Ecol Syst 26 301 321 Greene H W 1986 Diet and Arboreality in the emerald monitor Varanus prasinus with comments on the study of adaptation Fieldiana Zool N Ser 31 1 12 Hall B K 2003 Descent with modification the unity underlying homology and homoplasy as seen through an analysis of development and evolution Biological Reviews 78 3 409 433 Hennig W 1976 Phylogenetic Systematics Univ Illinois Press Champaign Urbana Chap 1 Kluge A G 2005 Zoologica Scripta 34 6 653 663 Mallet J 2008 Hybridization ecological races and the nature of species empirical evidence for the ease of speciation Philosophical Transactions Of The Royal Society B Biological Sciences 363 1506 2971 2986 Mindell DP Meyer A 2001 Homology evolving Trends in Ecology Evolution 16 8 434 440 Nixon K C and Q D Wheeler 1990 An amplification of the phylogenetic species concept Cladistics the International Journal of the Willi Hennig Society 6 211 223 O Hara Robert J 1997 Population thinking and tree thinking in systematics Zoologica Scripta 26 4 323 32 Orzack S H Sober E 1994 Optimality models and the test of adaptationism American Naturalist 143 3 361 380 Patterson C 1982 Morphological characters and homology Pp 21 74 in K A Joysey and A E Friday eds Problems of Phylogenetic Reconstruction Academic Press New York Pigliucci M 2003 Species as family resemblance concepts the dis solution of the species problem Bioessays 25 596 602 Pigliucci M 2008 Is evolvability evolvable Nature Reviews Genetics 9 1 75 82 Ree R H Detecting the historical signature of key innovations using stochastic models of character evolution and cladogenesis Evolution 59 2 257 265 Slowinski J B and Guyer C 1993 Testing whether certain traits have caused amplified diversification an improved method based on a model of random speciation and extinction American Naturalist 142 6 1019 1024 Vane Wright R I C J Humphries and P H Williams 1991 What to protect Systematics and the agony of choice Biological Conservation 55 235 254 Vrba E S and S J Gould 1986 The hierarchical expansion of sorting and selection sorting and selection cannot be equated Paleobiology 12 217 228 Wagner G P 1989 The origin of morphological characters and the biological basis of homology Evolution 43 1157 1171 Wagner G P and Altenberg L 1996 Complex adaptations and the evolution of evolvability Evolution 50 3 967 976 West Eberhard M J 1986 Alternative adaptations speciation and phylogeny a review Proc Natl Acad Sci USA 83 1388 1392 Westoby M Leishman M R Lord J M 1995 On misinterpreting the phylogenetic correction Journal Of Ecology 83 3 531 534 Accessory readings Alberch P 1989 The logic of monsters evidence for internal constraint in development and evolution Geobios m moire sp cial no 12 21 57 Baum D A 1998 Individuality and the existence of species through time Systematic Biology 47 641 653 Baum D A and K L Shaw 1995 Genealogical perspectives on the species problem Monographs in Systematic Botany from the Missouri Botanical Garden 53 289 303 Baum D A and M J Donoghue 2001 A likelihood framework for the study of adaptation Pages 24 44 In S Orzack and E Sober eds Adaptationism and Optimality Cambridge University Press New York Bolker J A and R A Raff 1996 Developmental genetics and traditional homology BioEssays 18 489 494 de Queiroz K 1985 The ontogenetic method for determining character polarity and its relevance to phylogenetic systematics Systematic Zoology 34 280 299 de Queiroz K 1999 The general lineage concept of species and the defining properties of the species category Pp 49 89 in R A Wilson eds Species New Interdisciplinary Essays MIT Press Cambridge MA de Quieroz K 1997a The Linnaean hierarchy and the evolutionization of taxonomy with emphasis on the problem of nomenclature Aliso 15 125 144 de Queiroz K 1998 The general lineage concept of species species criteria and the process of speciation A conceptual unification and terminological recommendations Pages 57 75 in Endless Forms Species and speciation D J Howard and S H Berlocher eds Oxford University Press New York de Queiroz K 2007 Species concepts and species delimitation Systematic Biology 56 879 886 de Quieroz K and J Gauthier 1992 1992 Phylogenetic taxonomy Annu Rev Ecol Syst 23 449 480 Galis F 2001 Key innovations and radiations Pp 581 605 in G P Wagner ed The Character Concept in Evolutionary Biology Academic Press San Diego Gould S J 2001 The interrelationship of speciation and punctuated equilibrium Pp 196 217 in J B C Jackson S Lidgard and F K McKinney eds Evolutionary Patterns Growth Form and Tempo in the Fossil Record University of Chicago Press Chicago Gould S J and R C Lewontin 1979 Spandrels of San Marco and the panglossian paradigm a critique of the adaptationist program Proceedings of the Royal Society of London Series BBiological Sciences 205 581 598 Haszprunar G 1992 The types of homology and their significance for evolutionary biology and phylogenetics Journal of Evolutionary Biology 5 13 24 Mayr E 1982 The Growth of Biological Thought Harvard Univ Press Cambridge Pp 614 616 233 235 Mayr E 1987 The ontological status of species scientific progress and philosophical terminology Biology and Philosophy 2 145 166 Miller A H
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