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Extant
still living
Extinct
dead
Binomial
two part name
Taxon (sing. taxa)
hierarchical categories
• Phenetic
classification of groups based on similarities
• Convergence
unrelated organisms developing similar traits
• Phylogenetics
systematics to discover the natural groups
• Clades (sing. clade)
natural groups (all members come from common ancestor)
• Cladogram
phylogenetic trees
• Monophyletic
most recent common ancestor and all its descendants
• Paraphyletic
most recent common ancestor and some of its descendants
• Polyphyletic
some descendants without their common ancestor
• Apomorphy
away from the ancestral condition
• Synapomorphy
Apomorphic character shared by more than one taxon
• Plesiomorphy
the ancestral character (similar to the ancestral condition)
the ancestral character (similar to the ancestral condition)
a pleisiomorphic character shared by multiple taxa (tells us nothing)
• Autapomorphy
a derived character unique to a single taxa
Parsimony
cladogram needing the least amount of change (fewest notches)
• Sistergroup(s)
closest relatives of a unit in a cladogram
• Homoplastic
traits that result from a convergence
cladograms are...
...phylogenetic hypotheses
Creator of cladistics
Willi Hennig
• Ectoderm
outer layer (integument)
Endoderm
inner layer (gut lining)
Mesoderm
middle layer (muscles and many organs)
• Metazoa
multicellular animals
• Eumetazoa
subcategory of metazoa, all animals other than porifera
Traits of Eumetazoa
Germ layers present, true tissues and organs, mouth and digestive system present
Porifera
subcategory of metazoa
Traits of Porifera
No germlayers, no true tissues or organs, intracellular digestion
• Bilateria
all eumetazoans except radiate animals
Traits of bilateria
bilateral symmetry, triploblastic
Radiate animals
cnidaria and ctenophora
radiate animal traits
diploblastic, radial symmetry, schizocoelous
Acoelous
without coelum
Coelous
with coelum
• Protostomata
animals with schizocoeleous development (blastopore forms mouth)
Deuterostomata
animals with enterocoelous development (blastopore forms anus)
Groups of deuterostome animals are
hemichordata, echinodermata, xenoturbellida, and chordata
Hemichordata
phylum of Deuterostomata, acorn worms
Why Hemichordata was thought to be sister group to chordata
they possess pharyngeal slits
• Echinodermata
phylum of Deuterostomata, starfish
Xenoturbellida
phylum of Deuterostomata
Ambulacraria
phylums Hemichordata and Echinodermata
Chordata
phylum of Deuterostomata
Traits of Chordata
notochord present at some stage of development, single dorsal hollow nerve cord, pharyngeal pouches and slits, post anal tail, segmented body (metameric) including segmented muscle blocks (myomeres) in at least the tail region, Endostyle present, ventral heart with dorsal and ventral bloo…
• Urochordata
subphylum of Chordata, sea-squirts, ~2000
traits of urochordata
sessile, blob-like, filter feed with basketlike pharynx, 2 body openings (incurrent and excurrent), simple circulatory and digestive system, tail and notochord in planktonic stage but lost, larvaceans don't lose them (paedomorphis)
• Cephalochordata
subphylum of Chordata, lancelets, ~22
Traits of cephalachordata
body with 3 openings (mouth surrounded by cirri has wheel organ, atriopore, anus), well developed circulatory and digestive systems, well developed notochord down whole body, myomeres better developed than Urochordata
• Vertebrata
subphylum of Chordata, myxinoformes and all other vertebrates,
Traits of vertebrata
chordates that possess a cranium that surrounds enlarged anterior part of nerve cord, brain with 3 regions (forebrain (telencephalon) unique to vertebrates), two or more semicircular canals in inner ear, optic auditory and olfactory organs paired, atrium absent, well developed circulator…
Vertbata + Cephalachordata
1. Well developed circulatory system with a pump (heart-like structure) that forces blood through the pharynx and a dorsal aorta that distributes blood to the body 2. Podocytes, special excretory cells (in vertebrates these are found in the kidney) 3. Myomeres - distinct blocks of m…
Vertebrata + Urochordata
• More recent view of chordate relationships based on DNA evidence. • The name Olfactores has been proposed for this grouping • Those in favor of this hypothesis suggest that the characters shared between cephalochordates and vertebrates may be plesiomorphic characters rather than …
Craniata
old name for Vertbrata
Notochord
cartilaginous skeletal rod supporting the body
Atrium
large opening in the body for filter feeding
Wheel organ
organ in mouth of lancelets that has ciliated ridges that facilitate movement of water into the mouth
Endostyle
thyroid in vertebrates, ciliated groove in pharynx of Urochordata, Cephalochordata, and lamprey larvae that produces mucus to gather food particles
Pharyngeal pouches
pouch between pharyngeal arches that becomes gills
Neural crest
4th germ layer derived from neural plate
Neural crest forms
Gill-arch skeleton (Cartilage in particular) - Complex sensory organs of the head (such as nose, eyes and inner ear) and body (including the lateral line system) - Melanocytes (pigment cells) - Connective tissue of the heart
Hox genes
govern development along long axis of body, doubling of these allowed for more complex bodies
Cambrian Period
~540-480 mya, burgess shale (Canada) and Yunnan, contains earliest chordates and protovertebrates, first appearance of chordates
Haikouella
300 fossils, likely had neural crest, making it sister group to vertebrata
True Vertebrates
All vertebrates minus myxinoidea
True Vertebrate synapimorphies
Presence of vertbrae - Well developed eyes - with extrinsic eye musculature - Pineal eye - "third eye" on top of head - Lateral line sensory system on head and body - Capacity for electroreception - Two or more semi-circular canals in inner ear
Cristazoans
chordates possessing a neural crest (haikouella, hagfishes, all vertebrates)
Placoderms
first jawed vertebrates, "plate skin", tooth plates not teeth
Eugnathostomata
vertebrates with teeth (syanapomorphy)
Teeth
hard mineralized structures of the dermis, pulp surrounded by dentine surrounded by enamel
Dentition
development of teeth and their arrangement in the mouth
Pulp cavity
center of tooth
• Homodont
one type of tooth in jaw
Heterodont
multiple types of teeth in jaw
Polyphodont
teeth are constantly being replaced through life
Chondrichthyes
class of eugnathostoma, cartilaginous fishes, appeared in Silurian period through today
traits of chondrichthyans
pelvic claspers, placoid scales (have pulp cavity and outer layer of dentine), and calcified cartilage (cartilage covered by mineralized layer of calcium)
stem group
paraphyletic group of only extinct taxa
crown group
monophyletic group, defined based on derived characteristics of extant taxa and can have extinct as well
Tessarae
block like deposits of calcium
Holocephali
group of chondrichthys, ratfishes
Holocephali traits
extant cartilaginous fishes with 1 gill opening, head clasper, autostylic jaws (palatoquadrate is fused to cranium), plate like teeth,large spine at start of dorsal fin, bifurcated claspers
Elasmobranchii
group of chondrichthys, most cartilaginous fishes
Elasmobranchii traits
extant cartilaginous fishes with 5-7 gill openings, ampullae of lorenzi used to detect weak electrical signals
Neoselachii
crown group of elasmobranchii
Amphistylic
jaw suspension where jaw is not attached to the skull
Holostylic
jaw suspension in fishes where the jaw is attached to the skull
Autostylic
jaw suspension in fishes where the jaw is attached to the skull
Galeomorpha
normal shark w/ anal fin, gill openings on side of head
Squaleomorpha
atypical shark w/o anal fin, gill openings on side of head
Batoidea
rays, skates, ray like sharks, lack anal fin, gill openings on ventral surface of head, Pectoral fins are enlarged and confluent with head - forming broad anterior end
Matrotrophy
live birth, embryo receives most of its nourishment from reproductive tract of female
Lecithotrophy
egg birth, embryo receives most of its nourishment from yolk
Osteichthyes
bony fishes
osteichthyan traits (synapomorphies)
presence of endochondral bone, gas filled bladder, fin rays, new jaw bones (dentary, maxilla, and premaxilla)
Sarcopterygii
class of osteichthya, lobed finned fishes, ~27,000 species
sarcopterygii traits
complex enamel coating (true enamel), pectoral and pelvic fins lobate
Actinopterygii
class of osteichthya, ray finned fishes, ~30,000 species (fin rays not unique)
Actinopterygian innovations
- Elasmoid scales are thin and flexible - Homocercal caudal fin - premaxilla freed from cranium and pharyngeal jaws developed
Premaxilla
front upper jaw
Maxilla
back upper jaw
Dentary
lower jaw
Endochondral bone
bone that forms within cartilage and replaces it eventually
Lepidotrichia
lightweight dermal bones (fin rays)
Paleoniscoids"
extinct actinopterygians
Polypteriformes
extant actinoperygian, bichir, ~15
Acipenseriformes
extant actinoperygian, sturgeon, ~30
Lepisosteiformes
extant actinoperygian, gar, 7
Amiiformes
extant actinoperygian, bowfin, 1
Teleostei
extant actinoperygian, seahorse, ~30,000 (marine and freshwater)
teleostei success is because
jaws no longer attached to cranium (bass eating), pharyngeal jaws, homocercal caudal fin
• Ganoid scales
small, light, bony scales (smaller than bony plates)
Ganoine
substance derived from enameloid
Elasmoid scales
thin, light weight, flexible scales
Cycloid
type of Elasmoid scale
Ctenoid
type of Elasmoid scale
Swimbladder
gas filled sac formed from the anterior portion of he gut
Heterocercal caudal fin
asymmetrical caudal fin (pleisiomorphic condition)
Homocercal caudal fin
symmetrical caudal fin (unique to Teleostei)
Oral jaws
normal jaws/teeth
Pharyngeal jaws
jaws/teeth that sit in the back of the throat, fused to gill arches
Ostariophysi
dominates freshwater, have weberian apparatus
Weberian Apparatus
complex structure that transfers vibrations from swim bladder to inner ear, can hear extremely well, unique to otophysi
Cypriniformes
order of otophyson, lack teeth on highly protrusible oral jaws, minnows
Siluriformes
order of otophyson, possess barbels and venom glands, catfish
Characiformes
order of otophyson, heterodonts with well developed teeth in oral jaws
Gymnotiformes
south american electric fishes, order of ostariophysi, have modified muscles that can produce weak electrical currents
Acanthopterygii
marine, dominates salt water, have spinous fin rays
Actinistia
sarcopterygian group, coelacanths, 2
Actinisia traits
Two dorsal fins, caudal fin symmetrical externally and internally (diphycercal caudal fin - with three lobes (upper, lower & middle)), very strange rostral organ(that senses electrical currents at the tip of the snout)
Coelacanthiformes
order of Actinistia
Latimeriidae
family of Coelacanthiformes
Latimeria
genus of Latimeriidae
Diphycercal caudal fin
caudal fin symmetrical internally and externally
Ceolocanth rostral organ
very strange organ that senses electrical current at tip of the snout
Dipnoi
sarcopterygian group, lungfishes, 6
dipnoi characteristics
Diphycercal caudal fin confluent with dorsal and anal fin, upper jaw fused to cranium (jaw suspension -just like the holocephalans), Large well developed lung (Singular, not paired like our own)
Ceratodontiformes
only order of Dipnoi
Protopteridae
family of Ceratodontiformes, African lungfishes
Lepidosirenidae
family of Ceratodontidae, South American lungfishes
Ceratodontidae
family of Ceratodontiformes, Australian lungfishes
• Tetrapoda
sarcopterygian group, ~27,000
tetrapoda traits
pectoral girdle separated from skull, presence of Zygapophyses, limbs with carpals tarsal and digits (phalanges), pelvic girdle attached to vertebral column (use exact language for exam)
Zygapophyses
interlocking vertebrae that resist twisting and bending, reinforce
Sacral Region
where the pelvic girdle attaches to the vertebral column
• "Agnatha"
jawless vertebrates, no longer recognized because is paraphyletic groups (would need to include jawed vertebrates as well to be monophyletic), most disappeared at end of Devonian period
Chronogram
phylogeny with a time axis to show time taxa existed
Myxinoidea
hagfishes, jawless "primitive" vertebrates
• Myxiniformes
hagfishes, represent most basal lineage of vertebrata around today
myxiniformes traits
no jaws, rudimentary eyes, well developed singular olfactory organ, slime pores, keratinized tongue
Nasohypophysial pore
nose of hagfish (1 opening), connected to pharynyx
• Barbels
a fleshy filament growing from the mouth or snout
Epidermis
outermost layer of skin
Dermis
2 layers of skin below epidermis
Keratinous
made of keratin, comes from skin
Arcualia
neural arches
Petromyzontiformes
lampreys, most basal extant "true vertebrate" organism
petromyzontiformes traits
no jaw, anguilliform, well developed eye, single nostril (not connected to pharynx), 7 gill pores (less than hagfish), keratinous teeth
"Cyclostomata"
lampreys and hagfishes, was paraphyletic group so removed
Endoskeleton
skeleton formed by cartilage, e.g. vertebrae
Exoskeleton
skeleton derived from the skin, comes together with endoskeleton to form singular skeleton, comes from ectoderm
Hydroxyapatite
complex compound of calcium and phosphorus used to form dermal tissue
Dermal bone
bone formed from the skin
Dentine
mineralized tissue
Enameloid
mineralized tissue
Conodonts
tiny microfossils composed of hydroxyapatite that are common in deposits from the late Cambrian to Triassic, do not have ghost lineage (fossil record complete for all of existence), hydroxyapatite common in vertebrates
• "Ostracoderms"
paraphyletic group of jawless fishes, covered in shell of bone that looked like arthropod, first to have pectoral fins (first paired fins) origin of exoskeleton
Ostracaderm traits
covered in shell of bone that looked like arthropod, first to have pectoral fins (first paired fins) origin of exoskeleton
• Gnathostomata
jawed vertebrates
• Visceral arch
embryonic structures that form gills and jaws
• Gill arch
cartilaginous rods that support gills, evolved into jaws
Mandibular arch
visceral arch made of upper and lower cartilage, forms front of jaw
Meckel's cartilage
lower arch of mandibular arch
Palatoquadrate cartilage
upper arch of mandibular arch
Hyoid arch
visceral arch made of upper and lower cartilage, forms back of jaw
Hyomandibular cartilage
upper arch of hyoid arch
Hyoid cartilage
lower arch of hyoid arch
gnaothostomata traits
origin of jaws (allowed for variance of predation), 2 pairs of limbs, 3 semi circular canals in inner ear
exoskeletons contain
dentine, enamel, and dermal bone

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