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GBIO 106: FINAL EXAM

Dependent Variable (Response measured bald cypress survival)
Variable you don't change 
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Processes of life
Movement, Ingestion, digestion, Respiration, excretion, and secretion 
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Population
The whole number of inhabitants occupying an area and continually being modified by increases and decreases 
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Cohesion, adhesion, and surface tension, high heat of fusion, high specific heat, high heat of vaporization, universal solvent
Properties of water? 
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Matter (Atom, Chair, Person)
Anything that has weight/mass & takes up space 
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Carbohydrates (polysaccharides), protein, DNA & RNA (nucleic acids)
Major classes of organic molecules and examples 
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Monomers (glucose, fructose, maltose, lactose, galactose)
Small unit that can join together with other small units to form polymers (examples) 
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Polymers (glycogen, starch, cellulose, chitin)
Large compound formed from combinations of many monomers (examples) 
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Liver stores Extra glucose as glycogen
What are a couple of places where these reactions occur? 
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DNA makes RNA and RNA makes protein
Tie the primary structure in with DNA & central dogma theory. 
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(Nucleus: DNA > RNA > Protein) > rough ER > vesicle > golgi > vesicle > plasma membrane
How does a cell secrete protein 
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DNA contains genetic material and doesn't leave nucleus, RNA leaves nucleus and is blueprint for proteins
Major functions of DNA & RNA? 
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What is ATP? What does it take to make ATP?
ATP is adenosine triphosphate, or potential energy 
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-Active transport: ATP is used, low to high concentration gradient, ion pumps -Passive transport: ATP is not used, concentration gradient is high to low, simple diffusion, osmosis, & facilitated diffusion
Active transport vs passive transport 
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DNA, RNA, protein, chromatin.
What is in a nucleus? 
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Osmosis
Movement of water from an area of high concentration to an area of low concentration through selectively permeable membrane 
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Concentration gradient and Brownian motion
What is required for diffusion to occur 
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A cell needs to have more surface area than volume in order to obtain nutrients & eliminate waste efficiently with the environment
How is surface area to volume ratio important in a cell? 
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Sun > producers > 1st consumers > 2nd > 3rd > 4th > decomposers (then producers and repeat)
Understand how to read an energy flow diagram 
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10% passed through food chain listed above 90% lost as heat
How do the laws of thermodynamics explain a food chain? 
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Producers
make their own food (algae, plants) 
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Without enzymes most biochemical reactions won't take place fast enough to sustain life.
In reality, how do enzymes help organisms 
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-Temperature: an extreme temperature may denature the enzyme & cause the reaction to drop. -pH: an extreme change in pH may denature the enzyme -Substrate concentration: as sub con increases rxn rate increases until enzyme become saturated. -Enzyme concentration: as enzyme con increases rxn rate increases is there is an excess substrate
Factors that affect enzyme activity 
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Enzymes speed up chemical reactions by lowering the activation energy required.
How do enzymes work? 
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Cellular respiration/glucose catabolism
How is (C6H12O6 + 6O2 ->6CO2 + 6H2O + energy) related to respiration an exhaling? 
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Fat and proteins
What could you use for energy other than glucose? 
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Different stages in cellular respiration
Understand how Glycolysis, kreb's cycle, and the ETC work together. 
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Photosynthesis & cellular respiration
What are two ways cells trap energy? 
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Pyruvate is converted into lactic acid to replenish NADP and if enough accumulates in the muscle you will get sore
If fermentation occurs, how does it affect your cells, tissue, and body? 
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Anaerobic respiration vs. aerobic respiration
-Anaerobic: respiration without oxygen; the process uses a respiratory ETC but does not use oxygen as the electron receptors. Occurs in bacteria, yeasts, some prokaryotes, red blood cells, and muscle cells. Products: lactic acid fermentation- lactic Acid, ATP alcoholic fermentation-ethyl alcohol, ATP, carbon dioxide. Site is in cytoplasm *** -Aerobic: uses oxygen. Site is in cytoplasm & mitochondria. Occurs in most cells. Stages: glycolysis, kreb's cycle ETC. products: Carbon dioxide, water, ATP. 
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Growth, maintenance, reproduction. Examples: thinking, making compounds needed by cell, muscle cell contraction
What are three major things that organisms use for energy? In addition, give at least 3 specific examples 
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Blue/violet and red. Because they are the most opposite of green
Which colors (wavelengths of light) would yield the highest photosynthetic rate in green plants? Why? 
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Chlorophyll
What is responsible for trapping light energy in cells? 
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To conduct photosynthesis. It enters the plant through the stomata
What do plants use CO2 for? How does it enter the plant? 
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Photolysis & turgor pressure. Electron acceptor
What are two big reasons a plant need waters? Another use? 
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Conversion of CO2 into organic compounds. In other words the energy of ATP and NADPH is used to form organic molecules from CO2
What is carbon fixation and when / where does it occur? 
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C3 examples
Trees, soybeans, potatoes 
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C4 examples
Corn, sugarcane, crabgrass 
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Cam plant examples
Cactus & pineapples 
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-plants store energy in the form of sugar -sugar can be transported to other parts of the plants that don't photosynthesize (roots) -cellular respiration to make ATP
Why is plants sugar so important to us 
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-plants use sugar to make other organic molecules (proteins, lipids) by linking carbon atoms together
What do plants use the sugar for that they have made? 
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Yes. Plants are able to utilize the energy they obtain from the sun, which allows for healthy growth and development.
Do plants aerobically respire like us? 
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Replicate DNA & divide (nucleus & cytoplasm)
What are two main things a cell must do before making an exact copy of itself? 
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Because of mitosis your cells are duplicated from your first cell (a fertilized egg)
How can the hierarchy of life be explain through cell division? (From zygote to organism) 
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Yes because our cells were duplicated from our first cell (a fertilized egg)
Do all of the cells in your body contain the same DNA? Why? 
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Mitosis: occurs in majority of body cells (somatic cells). It is when a parent cell divides to produce an identical daughter cell. Responsible for growth and maintenance. Meiosis: a two-staged cell division that occurs in reproductive organs that produces haploid daughter cells (sex cells) that contain one copy of each chromosome (used primarily after too much netflix & chill)
Mitosis Vs. meiosis 
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Random fertilization creates genetic variation by randomly combining a sperm and an egg. Metaphase I creates genetic variation by the random positioning of each homologous pair of chromosomes determining which chromosome goes into each new sex cell. Crossing over creates genetic variation in sexual life cycles by combining DNA inherited from two parents into a single chromosome during Prophase I of Meiosis I
Cross over, Metaphase I, and random fertilization are sources of genetic variation. Why? 
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Alleles
Different forms of a gene 
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Homozygous
Having the same dominant allele for a gene on both homologous chromosomes 
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Heterozygous
Having different alleles 
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Locus
A specific place along the length of a chromosome where a given gene is located. 
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Pairs of chromosomes that contain genes for the same traits -cells that contain two pits of each chromosome are described as being diploid (2n) -sex cells only have 1 of each chromosome (no pairs) & are described as being haploid (n)
What are homologous chromosomes? How are they related to gene pairs 
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Genotypes
The particular alleles that are present for a trait 
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Phenotypes
Physical expressions of genetic trait Ratio 
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Mendels 1st law The law of segregation For every trait there are 2 alleles and these separate and recombine randomly through inheritance​ Mendels 2nd law of independent assortment The alleles of a gene for one trait will separate independently from the alleles of a gene for another trait
Understand significant events in meiosis and how they relate to mender's laws 
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Genotype and phenotype
Understand the logic behind the crosses (what do they tell us?) 
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A specific sequence of DNA on the chromosome
What is a gene & where can they be found? 
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-a protein with DNA wrapped around it -keep DNA orderly -mitosis, interphase
What are chromosomes? What are their function? How and when are they replicated? 
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Nondisjunction causes abnormalities and results in Down's syndrome, meta females, super males, trisomy males
What causes chromosome abnormalities? What are some examples? 
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DNA replication. When does it occur in cells? What is the outcome?
interphase, more dna 
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Incomplete Dominance
A pattern of inheritance in which two alleles, inherited from the parents, are nether dominant not recessive. The resulting offspring has a phenotype that is a BLENDING of the parental traits 
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Co-Dominance
Situation in which both alleles of a gene contribute to the phenotype of the organism. SHARED DOMINANCE 
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Polygenic inheritance
Combined effect of two or more genes on a single character. MULTIPLE ALLELES 
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Epistasis
A type of gene interaction in which one gene alters the phenotypic effects of another gene that is independently inherited. 
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X-linked recessive traits
Red-green color blindness & hemophilia A 
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Pleiotropy
A single gene having multiple effects on an individuals phenotypes 
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Pedigrees
A chart that shows a trait in a family and how it is inherited 
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Independent variable (Nutria's effect on a cypress)
A variable you change 
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Control
Baseline for comparison 
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Null hypothesis
the independent variable does not effect the dependent variable 
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Alternate hypothesis
nutria have negative impact on cypress survival 
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Ingestion
the consumption of a substance by an organism 
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Digestion
the process of breaking down food by mechanical and enzymatic action in the alimentary canal into substances that can be used by the body 
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Respiration
a set of metabolic reactions and processes that take place with in the cells of organisms. It stores biochemical energy within adenosine triphosphate (ATP) molecules 
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Aerobic
Cellular energy involving oxygen 
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Anaerobic
cellular energy without oxygen 
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Secretion
a process by which substances are produced and discharged from a cell, gland, or organ for a particular function in the organism or for excretion 
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Excretion
the process of eliminating or expelling waste matter 
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Species
lowest taxonomic tank & most basic unit 
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Hydrolysis reactions
How macromolecules broken down; To split water 
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Dehydration synthesis (condensation reaction)
How are macromolecules made; a chemical reaction that builds up molecules by losing water molecules and covalently bonding them 
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Primary structure
The unique sequence of amino acids in the polypeptide chain 
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Energy storage
What is ATP used for? 
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It takes one phosphates to turn ADP into ATP.
What does it take to make ATP 
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Powerhouse of the cell
Function of Mitochondria? 
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Simple diffusion
Movement of molecules from an area of high concentration to an area of low concentration 
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Facilitated diffusion
Moves through membrane with a protein 
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Temperature and pH
What are some factors that affect osmosis and diffusion 
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Consumers
organisms that eat living producers and/or other consumers for food 
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Decomposers
fungi and bacteria that break complex organic material into smaller molecules (bacteria, fungi) 
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1st- copy its DNA 2nd- Replicate its organelles and divide its cytoplasm
How does a cell make an exact copy of itself? 
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Eukaryotic chromosomes (only visible during cell division)
made of one long molecule of DNA wound around proteins 
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23
How many pairs of chromosomes in the body cells of humans? 
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Homologous chromsomes
pairs of chromosomes that contain genes for same traits 
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Diploid
cells that contain pairs or 2 of each chromosome 
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Haploid (sex cells)
only have 1 of each chromosome 
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Mitosis
occurs in body cells (somatic) and responsible for growth and maintenance 
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Interphase (90%) and mitosis
2 parts of the cell cycle? 
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G1, synthesis, G2
Interphase: period of cell growth DNA is replicated cell prepares for mitosis 
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sister chromatids
duplicated chromosomes that consist of 1 parental strand and 1 complementary daughter strand 
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Mitosis and Cytokinesis
Cell division: 
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Mitosis
nuclear division in which chromosome numbers is maintained from one generation to the next 
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prophase, metaphase, anaphase, and telophase
4 phases of Mitosis 
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Cytokinesis
the division of the cell's cytoplasm 
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Prophase
spindle fibers are formed, membrane dissolves freeing duplicated chromosomes, and the spindle fibers attach to the centromere 
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Metaphase
The sis chromatids line up in the middle of the cell along the plate 
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Anaphase
Chromosomes migrate towards opposite poles of the cell 
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Telophase
Spindle apparatus begin to break, membrane reforms, chromosomes uncoil back into chromatin form 
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as telophase is occurring and generally after telophase
When does cytokinesis occur and end? 
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Meiosis
2 staged cell division that occurs in reproductive organs that produces haploid cells 
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Synapsis
the pairing of homologous chromosomes 
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Metaphase I
creates genetic variation by the random positioning of each homologous pair of chromosomes determining which chromosome goes into each new sex cell 
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Random fertilization
creates genetic variation by randomly combining a sperm and an egg 
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Non-disjunction
the failure of 1 or more pairs of chromosomes to separate during cell division 
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Genetics
the study of the patterns of inheritance 
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Heredity
The study of the passage of traits fro parents to offspring 
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Genes
specific sequences of DNA located on chromosomes 
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Mendel's 1st law
For every trait there are 2 alleles and these separate and recombine randomly through inheritance (law of segregation) 
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Genotype
the particular alleles that are present for a trait 
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Phenotype
physical expression of a trait 
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Mendel's 2nd law
Law of independent assortment; the alleles of a gene for one trait will separate independently from the alleles of a gene for another trait 
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Gene linkage
the tendency for genes to be located on the same chromosome and therefore to be inherited together 
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Epistasis
2 alleles of a gene will mask the expression of the alleles of another gene
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