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Package simecol July 2 2014 Version 0 8 4 Date 2013 09 15 Title Simulation of ecological and other dynamic systems Author Thomas Petzoldt Depends R 2 14 deSolve methods Suggests tcltk FME lattice LazyLoad yes Maintainer Thomas Petzoldt thomas petzoldt tu dresden de Description simecol is an object oriented framework to simulate ecological and other dynamic systems It can be used for differential equations individual based or agent based and other models as well The package helps to organize scenarios avoids copy and paste and improves readability and usability of code License GPL 2 URL http www simecol de Repository CRAN Repository R Forge Project simecol Repository R Forge Revision 233 Repository R Forge DateTimeStamp 2013 09 15 19 31 06 Date Publication 2013 09 26 16 46 19 NeedsCompilation yes 1 2 simecol package R topics documented simecol package addtoenv approxTime as simObj CA chemostat conway diffusion eightneighbours fitOdeModel fixParms fromtoby initialize methods iteration listOrNULL class lv lv3 mixNamedVec neighbours observer odeModel p constrain parms pcuseries peaks plot methods print methods sEdit seedfill sim methods ssqOdeModel upca Index 2 6 7 8 9 11 12 14 16 17 21 22 23 24 26 27 28 30 31 34 36 38 40 42 43 44 45 45 46 47 48 50 53 simecol package The simecol Package Description The simecol package is intended to give users scientists and students an interactive environment to implement distribute simulate and document ecological and other dynamic models without the need to write long simulation programs An object oriented framework using the S4 class system provides a consistent but still flexible approach to implement simulation models of different types differential equation ODE PDE models class odeModel simecol package 3 grid oriented individual based models class gridModel and particle diffusion type models class rwalkModel individual based models class indbasedModel other model types by deriving a user specified subclass from simObj Each

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