Mizzou INFOINST 8010 - Protein Function Prediction (66 pages)

Previewing pages 1, 2, 3, 4, 31, 32, 33, 34, 35, 63, 64, 65, 66 of 66 page document View the full content.
View Full Document

Protein Function Prediction



Previewing pages 1, 2, 3, 4, 31, 32, 33, 34, 35, 63, 64, 65, 66 of actual document.

View the full content.
View Full Document
View Full Document

Protein Function Prediction

53 views


Pages:
66
School:
University of Missouri
Course:
Infoinst 8010 - Problem Solving in Bioinformatics

Unformatted text preview:

Protein Function Prediction Jianlin Cheng PhD Department of Computer Science Informatics Institute 2009 References Slides and documents at www geneontology org R Rentzsch and C A Orengo Trends Biotechnology 2009 Widely Used Systems for Protein Function Definition Enzyme Commission EC Transporter Classification TC Riley scheme assign prokaryotic gene products to cellular processes The MIPS Functional Catalogue FUNCAT extension of Riley to all three kinds of life Kyoto Enclyclopedia of Genes and Genomes KEGG Gene Ontology GO molecular function biological process and cellular component Gene Ontology widely adopted AgBase www geneontology org Gene Ontology Biological process ontology Which process is a gene product involved in Molecular function ontology Which molecular function does a gene product have Cellular component ontology Where does a gene product act Where is it Mitochondrial p450 GO cellular component term GO 0005743 What does it do substrate O2 CO2 H20 product monooxygenase activity GO molecular function term GO 0004497 Which process is this electron transport http ntri tamuk edu cell mitochondrion krebpic html GO biological process term GO 0006118 Molecular function ontology Nucleic acid binding is a type of binding is a is a DNA binding is a type of nucleic acid binding Biological process ontology Adaxial abaxial pattern formation is a type of pattern specification is a is a part of Adaxial abaxial pattern specification is a part of adaxial abaxial pattern formation Cellular component ontology nucleus is part of the intracellular domain is a membranebound organelle is a type of organelle part of Categorizing gene products is called annotation process function component The gene product inner no outer is involved in adaxial abaxial axis specification process function component The gene product inner no outer has transcription factor activity process function component The gene product inner no outer is active in the nucleus Clark et al 2005 is a part of Fun



View Full Document

Access the best Study Guides, Lecture Notes and Practice Exams

Loading Unlocking...
Login

Join to view Protein Function Prediction and access 3M+ class-specific study document.

or
We will never post anything without your permission.
Don't have an account?
Sign Up

Join to view Protein Function Prediction and access 3M+ class-specific study document.

or

By creating an account you agree to our Privacy Policy and Terms Of Use

Already a member?